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broadinstitute/gatk:4.4.0.0

Manifest digest

sha256:044112d3d70603732d4a654ecaee33919cf9d45332d47268f5f1697b6ed558ed

OS/ARCH

linux/amd64

Compressed size

2.81 GB

Last pushed

over 3 years by droazen

Type

Image

Manifest digest

sha256:044112d3d70603732d4a654ecaee33919cf9d45332d47268f5f1697b6ed558ed

Image Layers

Image Layers

1ADD file ... in / 25.45 MB
2/bin/sh -c [ -z "$(apt-get34.54 KB
3/bin/sh -c set -xe &&849 B
4/bin/sh -c mkdir -p /run/systemd162 B
5CMD ["/bin/bash"]0 B
6RUN /bin/sh -c apt-get update495.38 MB
7RUN /bin/sh -c java -version129 B
8RUN /bin/sh -c echo "deb193.27 MB
9ENV HOME=/root0 B
10WORKDIR /root32 B
11CMD ["bash"]0 B
12ENV JAVA_LIBRARY_PATH=/usr/lib/jni0 B
13ENV DOWNLOAD_DIR=/downloads0 B
14ENV CONDA_URL=https://repo.continuum.io/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh0 B
15ENV CONDA_MD5== 81c773ff87af5cfac79ab862942ab6b30 B
16ENV CONDA_PATH=/opt/miniconda0 B
17RUN /bin/sh -c mkdir $DOWNLOAD_DIR42.56 MB
18RUN /bin/sh -c rm -rf617 B
19/bin/sh -c rm /etc/apt/sources.list.d/google-cloud-sdk.list193 B
20/bin/sh -c apt update29.58 MB
21/bin/sh -c apt-key list92 B
22WORKDIR /gatk127 B
23COPY dir:64a22215356a760089fa364305aa071c5f4d9e91e64c760b1842aa9948207c04 in . 607.17 MB
24/bin/sh -c ln -s $(146 B
25/bin/sh -c ln -s $(146 B
26/bin/sh -c ln -s $(145 B
27WORKDIR /root0 B
28/bin/sh -c java -jar gatk.jar131 B
29/bin/sh -c mkdir /gatkCloneMountPoint142 B
30/bin/sh -c mkdir /jars127 B
31/bin/sh -c mkdir .gradle152 B
32WORKDIR /gatk0 B
33ENV CI=true0 B
34/bin/sh -c echo "source activate554 B
35WORKDIR /root0 B
36/bin/sh -c cp -r /root/run_unit_tests.sh556 B
37/bin/sh -c cp -r gatk.jar145 B
38ENV CLASSPATH=/gatk/gatk.jar:0 B
39WORKDIR /gatk0 B
40/bin/sh -c chmod -R a+rw607.17 MB
41ENV PATH=/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
42/bin/sh -c conda env create879.01 MB
43CMD ["bash" "--init-file" "/gatk/gatkenv.rc"]0 B
44ENV PATH=/gatk:/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

Command

ADD file:08e718ed0796013f5957a1be7da3bef6225f3d82d8be0a86a7114e5caad50cbc in /