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ctomlins/pacbio_sv_pipeline:v3.0.0

Index digest

sha256:cfbd9e66e07c6a02dbda15f91c8ad44832fe5542394381e65f30c587fd9c8263

OS/ARCH

linux/amd64

Compressed size

182.3 MB

Last pushed

13 days by ctomlins

Type

Image

Manifest digest

sha256:ead16a1005ae2993e1d736082d06f4a4ac88e9dae03c6a97f052fd8bd0a735de

Image Layers

Image Layers

1# debian.sh --arch 'amd64' out/28.46 MB
2ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
3RUN /bin/sh -c set -eux;1.23 MB
4ENV GPG_KEY=7169605F62C751356D054A26A821E680E5FA63050 B
5ENV PYTHON_VERSION=3.13.160 B
6ENV PYTHON_SHA256=f4b1bfb3c79b5bb11b8d228a12504163b4c0dab4d679828d8f5f26b6cb6ab35d0 B
7RUN /bin/sh -c set -eux;11.37 MB
8RUN /bin/sh -c set -eux;250 B
9CMD ["python3"]0 B
10SHELL [/bin/bash -euo pipefail -c]0 B
11ENV LANG=C.UTF-8 LC_ALL=C.UTF-8 PYTHONUNBUFFERED=1 PYTHONDONTWRITEBYTECODE=10 B
12RUN /bin/bash -euo pipefail -c5.1 MB
13COPY /opt/hts/ /opt/hts/ # buildkit18.91 MB
14COPY /opt/pacbio-bin/ /usr/local/bin/ # buildkit13.42 MB
15RUN /bin/bash -euo pipefail -c3.34 KB
16RUN /bin/bash -euo pipefail -c103.76 MB
17RUN /bin/bash -euo pipefail -c3.14 KB
18COPY --chmod=0755 svpack.py /usr/local/bin/svpack #7.25 KB
19COPY --chmod=0755 pacbio_align_and_call_svs.sh /usr/local/bin/pacbio_align_and_call_svs #7.31 KB
20RUN /bin/bash -euo pipefail -c21.62 KB
21RUN /bin/bash -euo pipefail -c32 B
22LABEL org.opencontainers.image.title=PacBio HiFi SV pipeline0 B
23WORKDIR /data94 B
24CMD ["/bin/bash"]0 B

Command

# debian.sh --arch 'amd64' out/ 'trixie' '@1791158400'